ERICH ALLEN PETERSON


PUBLICATIONS & TALKS

Journal Papers

  1. Shibata T, Shah S, Evans T, Coleman HN, Lieblong BJ, Spencer HJ, Quick CM, Sasagawa T, Stephens OW, Peterson E, Johann DJ, Lu YC, Nakagawa M. Expansion of Human Papillomavirus-Specific T Cells in Periphery and Cervix in a Therapeutic Vaccine Recipient Whose Cervical High-Grade Squamous Intraepithelial Lesion Regressed. Frontiers in Immunology, 2021, paper
  2. Peterson EA, Ma L, Shin IJ, Muesse J, Marino K, Steliga MA, Johann DJ. NPARS – A Novel Approrch to Address Accuracy and Reproducibility in Genomic Data Science. Frontiers in Big Data, 2021, paper
  3. Clemens MM, Kennon-McGill S, Vazquez JH, Stephens OW, Peterson EA, Johann DJ, Allard FD, Yee EU, McCullough SS, James LP, Finck BN, McGill MR. Exogenous Phosphatidic Acid Reduces Acetaminophen-Induced Liver Injury in Mice by Activating Hepatic Interleukin-6 Signaling Through Inter-Organ Crosstalk. Acta Pharmaceutica Sinica B, 2021, paper
  4. Ashby C, Rutherford M, Bauer MA, Peterson EA, Wang Y, Boyle EM, Wardell CP, Walker BA. TarPan: An Easily Adaptable Targeted Sequencing Panel Viewer for Research and Clinical Use. BMC Bioinformatics 21, 144, 2020, PMID: 32293247, paper
  5. Vara N, Liu Y, Yan Y, Lensing SY, Colorado N, Robinson D, Zhang J, Zhang X, Peterson EA, Baltz NJ, Zhou D, Bertaina A, Johann DJ, Emanuel PD, Liu YL. Sustained Fetal Hematopoiesis Causes Juvenile Death from Leukemia: Evidence from a Dual-Age-Specific Mouse Model. Blood Advances, 2020; 4 (15): 3728–3740, PMID: 32777070, paper
  6. Ashby C, Bauer MA, Peterson EA, Johann DJ. Example of a Scalable and Adaptable Approach for NGS Analyses Leveraging High-Performance Computing. Pathological Specimens and Genomic Medicine, pp. 247-269, World Scientific, April 2019. paper
  7. Johann DJ, Steliga M, Shin IJ, Yoon D, Arnaoutakis K, Hutchins L, Liu M, Liem J, Walker K, Pereira A, Yang M, Jeffus SK, Peterson E, Xu J. Liquid Biopsy and Its Role in an Advanced Clinical Trial for Lung Cancer. Experimental Biology and Medicine , Vol 243(3), pp. 262-271, 2018. PMID: 29405770, paper
  8. Chavan SS, He J, Tytarenko R, Deshpande S, Patel P, Bailey M, Stein CK, Stephens O, Weinhold N, Petty N, Stewart D, Rasche L, Bauer M, Ashby C, Peterson EA, Ali S, Ross J, Miller VA, Stephens P, Thanendrarajan S, Schinke C, Zangari M, Rhee van F, Barlogie B, Mughal TI, Davies FE, Morgan GJ, Walker BA. Bi-allelic Inactivation is More Prevalent at Relapse in Multiple Myeloma, Identifying RB1 as an Independent Prognostic Marker. Blood Cancer Journal, 2017. PMID: 28234347, paper
  9. Weinhold N, Ashby C, Rasche L, Chavan SS, Stein C, Stephens OW, Tytarenko R, Bauer MA, Meissner T, Deshpande, S, Patel PH, Buzder T, Molnar G, Peterson EA, van Rhee F, Zangari M, Thanendrarajan S, Schinke C, Tian E, Epstein J, Barlogie B, Davies FE, Heuck CJ, Walker BA, Morgan GJ. Clonal Selection and Double Hit Events Involving Tumor Suppressor Genes Underlie Relapse from Chemotherapy: Myeloma as a Model. Blood, 2016. paper
  10. Peterson EA, Bauer MA, Chavan SS, Ashby C, Weinhold N, Heuck CJ, Morgan GJ, Johann DJ. Enhancing Cancer Clonality Analysis with Integrative Genomics. BMC Bioinformatics 2015, 16(Suppl 13), September 2015, PMID: 26424171. paper
  11. Peterson EA, Chavan SS, Bauer MA, Heuck CJ, Johann DJ. Revealing the Inherent Heterogeneity of Human Malignancies by Variant Consensus Strategies Coupled with Cancer Clonal Analysis. BMC Bioinformatics 2014, 15(Suppl 11):S9, October 2014, PMID: 25350589. paper
  12. Bauer MA, Chavan SS, Peterson EA, Heuck CJ, Johann DJ. Leveraging the New with the Old: Providing a Framework for the Integration of Historic Microarray Studies with Next Generation Sequencing., BMC Bioinformatics 2014, 15(Suppl 11):S3, October 2014, PMID: 25350881. paper
  13. Chavan SS, Bauer MA, Peterson EA, Heuck CJ, Johann DJ. Towards the Integration, Annotation and Association of Historical Microarray Experiments with RNA-seq. BMC Bioinformatics, Vol. 14 (Suppl 14):S4, October 2013, PMID: 24268045. paper

Conference Papers

  1. Peterson EA, Zhang L, Tang P. Mining Probabilistic Association Rules from Uncertain Databases with Pruning. In Proceedings of IEEE SoutheastCon 2014 Conference, Lexington, KY, USA, March 2014. paper
  2. Peterson EA, Tang P. Mining Probabilistic Generalized Frequent Itemsets in Uncertain Databases. In Proceedings of the 51tst ACM Southeast Conference (ACMSE), Savannah, GA, USA, April 2013. paper / tech report / slides / code
  3. Peterson EA, Tang P. Fast Approximation of Probabilistic Frequent Closed Itemsets. In Proceedings of the 50th ACM Southeast Conference (ACMSE), Tuscaloosa, AL, USA, March 2012. paper / slides
  4. Abuhalimeh A, Tudoreanu ME, Peterson EA. How People Perceive the Accuracy of Information. AIP Conference Proceedings, Vol. 1326, No. 1, pp. 74–79, 2011. (virtually identical to paper #5).
  5. Tang P, Peterson EA.
    Mining Probabilistic Frequent Closed Itemsets in Uncertain Databases. In Proceedings of the 49th ACM Southeast Conference (ACMSE), Kennesaw, Georgia, USA, March 2011. paper / tech report / slides / code
  6. Abuhalimeh A, Tudoreanu E, Peterson EA. Subjective Evaluation of Accuracy of Data and Visualization. In Proceedings of the 15th International Conference on Information Quality (ICIQ) 2010, Little Rock, AR, USA, November 2010. paper
  7. Peterson EA, Tang P. Mining Relaxed Closed Subspace Clusters. In Proceedings of the 48th ACM Southeast Conference (ACMSE), Oxford, Mississippi, USA, April 2010. paper
  8. Peterson EA, Tang P. A Hybrid Approach to Mining Frequent Sequential Patterns. In Proceedings of the 47th ACM Southeast Conference (ACMSE), Article No. 87, Clemson, South Carolina, USA, March 2009. paper
  9. Peterson EA, Tang P. Mining Frequent Sequential Patterns with First-Occurrence Forests. In Proceedings of the 46th ACM Southeast Conference (ACMSE), pp. 34-39, Auburn, Alabama, USA, March 2008. paper
  10. Wei H, Dancer S, Kolluru S, Peterson EA. Framework of Bitmap Indices and Parallel Data Retrieval for Large Scale Data Warehouse on Grid. In Proceedings of the IADIS International Conference WWW/Internet 2007, pp. 329-336, 2007.

Abstracts & Posters

  1. Ma L, Peterson EA, Johann DJ. Towards Reproducible Genomic Data Science. Midsouth Computational Biology & Bioinformatics Society (MCBIOS) and Massive Analysis and Quality Control (MAQC) Society Joint Conference, Virtual, April 2021. (Oral)
  2. Makagawa M, Boysen G, Evans T, Rahmatallah Y, Glazko G, Stephens O, Peterson E, Johann DJ, Ravilla R, Coleman H. Identifying Active Components of Candida Skin Test Reagent Used as an Adjuvant in an HPV Therapeutic Vaccine, PepCan. 33rd International Papillomavirus Conference (IPVC), Barcelona, Spain, March 2020. (Poster)
  3. Johan DJ, et al. and Peterson E. Towards Advanced Precision Oncology Assays - Selection of Immunohistochemistry Chromogen Impacts Microdissection and Downstream Molecular Analysis of Archival Specimens. AACR 2020 Annual Meeting, San Diego, CA, USA, April 2020. (Poster)
  4. Steliga M, Muesse J, Shin IJ, Arnaoutakis K, Maraboyina S, Jeffus SK, Oveido SP, Peterson E, Johann DJ. Using Model Systems to Improve Outcomes for Early Stage NSCLC. Journal of Thoracic Oncology, Volume 14, Issue 10, S434, October 2019. abstract (Poster)
  5. Peterson EA, Shin IJ, Steliga M, Muesse J, Jeffus S, Stephens O, Liu M, Liem J, Johann DJ. Approaches Towards Verification and Validation of Model Systems. 16th Annual Conference of the Midsouth Computational Biology & Bioinformatics Society (MCBIOS '19), Birmingham, AL, USA, March 2019. abstract (Oral)
  6. Johann DJ, Steliga M, Muesse J, Peterson E, Shin IJ, Jeffus S, Maraboyina S, Meena N, Yang M, Walker K, Pereira A, Hong H, Liem J, Liu M, Xu J, Tong W. Scientific and Methodological Advances in Liquid Biopsies to Further the Development of Lung Cancer-Based Precision Medicine. 5th Annual Meeting of the Arkansas Bioinformatics Consortium (AR-BIC '19), Little Rock, AR, USA, February 2019. (Poster)
  7. Johann DJ, Muesse J, Shin IJ, Arnaoutakis K, Jeffus SK, Maraboyina S, Peterson E, Steliga M. Precision Medicine in Lung Cancer: Towards Predicting Recurrence for Early Stage Disease. AACR 2018 Special Conference - Convergence: AI, Big Data & Prediction in Cancer, Newport, RI, USA, October 2018. abstract (Poster)
  8. Steliga MA, Tingquist ND, Peterson EA, Johann DJ. The Use of Blood-Based Molecular Profiles to Monitor Minimal Residual Disease or Recurrence after Surgical Resection. International Association for the Study of Lung Cancer: Multidisciplinary Thoracic Oncology Conference, Chicago, IL, USA, September 2017. (Poster)
  9. Peterson EA, Gomez-Acevedo H, Liem J, Liu P, Johann DJ. An Automated Regression Testing Approach for High-Throughput Molecular Profiling Data. 14th Annual Conference of the Midsouth Computational Biology & Bioinformatics Society (MCBIOS '17), Little Rock, AR, USA, March, 2017. abstract / poster (Poster)
  10. Chavan SS, Heuck C, He J, Tytarenko R, Deshpande S, Patel P, Bailey M, Stein CK, Stephens OW, Weinhold N, Petty N, Steward D, Rasche L, Bauer MA, Ashby C, Peterson EA, Zhong S, Nahas M, Ali SM, Vergillo J, Ross J, Miller VA, Stephens PJ, Schinke C, Zangari M, van Rhee F, Barlogie B, Mughal TI, Davies FE, Morgan GJ, Walker BA. High Risk Myeloma Is Characterized By the Bi-Allelic Inactivation of CDKN2C and RB1. 58th ASH Annual Meeting and Exposition, San Diego, CA, USA, December 2016. (Poster)
  11. Melchor L, Jones JR, Lenive O, Peterson EA, Brioli A, Murison A, Wardell CP, Kaiser MF, Proszek P, Boyle EM, Begum DB, Pawlyn C, Johnson DC, Rapado I, Cairns DA, Gregory WM, Owen RG, Jackson GH, Drayson MT, Davies FE, Martínez-López J, Houlston RS, Greaves M, Walker BA, Morgan GJ. Spatiotemporal Analysis of Intraclonal Heterogeneity in Multiple Myeloma: Unravelling the Impact of Treatment and the Propagating Capacity of Subclones using Whole Exome Sequencing. 57th ASH Annual Meeting and Exposition, Orlando, FL, USA, December 2015. (Oral)
  12. Heuck C, Weinhold N, Peterson EA, Bauer M, Stein CK, Ashby T, Chavan SS, Tytarenko R, Stephens OW, Meissner T, Johann DJ, Rhee F, Waheed S, Johnson SK, Zangari M, Matin A, Petty N, Yaccoby S, Davies FE, Epstein J, Barlogie B, Morgan GJ. The Impact of Combination Chemotherapy and Tandem Stem Cell Transplant on Clonal Substructure and Mutational Pattern at Relapse of MM. 57th ASH Annual Meeting and Exposition, Orlando, FL, USA, December 2015. (Oral)
  13. Heuck C, Chavan SS, Stein CK, Tytarenko R, Weinhold N, Ali S, Miller VA, Thanendrarajan S, Schinke C, Mohan M, Sawyer J, Peterson EA, Bauer MA, Ashby TC, Johann DJ, Rhee F, Waheed S, Zangari M, Davies FE, Barlogie B, Morgan GJ. Comprehensive Genomic Profiling of Multiple Myeloma in the Course of Clinical Care Identifies Targetable and Prognostically Significant Genomic Alterations. 57th ASH Annual Meeting and Exposition, Orlando, FL, USA, December 2015 (Oral)
  14. Weinhold N, Chavan SS, Heuck C, Stephens OW, Tytarenko R, Bauer M, Peterson EA, Ashby TC, Meissner T, Stein CK, Johann DJ, Johnson SK, Yaccoby S, Epstein J, Rhee F, Zangari M, Schinke C, Thanendrarajan S, Davies FE, Barlogie B, Morgan GJ. High Risk Multiple Myeloma Demonstrates Marked Spatial Genomic Heterogeneity Between Focal Lesions and Random Bone Marrow; Implications for Targeted Therapy and Treatment Resistance. 57th ASH Annual Meeting and Exposition, Orlando, FL, USA, December 2015. (Oral)
  15. Peterson EA, Chavan SS, Bauer MA, Heuck C, Johann DJ. Revealing the Inherent Heterogeneity of Human Malignancies by Variant Consensus Strategies Coupled with Cancer Clonal Analysis. 11th Annual Conference of the Midsouth Computational Biology & Bioinformatics Society (MCBIOS '14), Stillwater, OK, USA, March 2014. (Best Post-Doc Oral Presentation Award) abstract / slides (Oral)
  16. Bauer MA, Peterson EA, Chavan SS, Pollock D, Heuck C, Johann DJ. Leveraging The Old With The New: Exploring and Integrating Historic Microarray Studies With Next Generation Sequencing For Multiple Myeloma. 55th ASH Annual Meeting and Exposition, New Orleans, LA, USA, December 2013. abstract / poster (Poster)
  17. Johann DJ, Zhang L, Peterson EA. Towards computer assisted laser microdissection. 2013 Southeast Regional IDeA Meeting, Little Rock, AR USA, November 2013. (Oral)
  18. Peterson EA, Chavan SS, Bauer MA, Heuck C, Johann DJ. Variant Consensus Reporter: Increasing the Confidence of Variants in Whole Exome Sequencing via a Consensus Approach. 2013 Southeast Regional IDeA Meeting, Little Rock, AR USA, November 2013. abstract / slides(Oral)
  19. Chavan SS, Bauer MA, Peterson EA, Heuck C, Yaccoby S, Johann DJ. Profiling Multiple Myeloma Engraftment Phenomena via an in-vivo SCID Mouse Model and RNA-seq. 2013 Southeast Regional IDeA Meeting, Little Rock, AR USA, November 2013. abstract / slides (Oral)
  20. Chavan SS, Bauer MA, Peterson EA, Johann DJ. Towards the Integration, Annotation and Association of Historical Microarray Experiments with RNA-seq. Tenth Annual Midsouth Computational Biology & Bioinformatics Society Conference, Columbia, MO, USA, April 2013. abstract (Oral)

Book Chapters

  1. Ashby C, Bauer MA, Peterson EA, Johann DJ. Example of a Scalable and Adaptable Approach for NGS Analyses Leveraging High-Performance Computing. Pathological Specimens and Genomic Medicine, pp. 247-269, World Scientific, April 2019. chapter

Invited Talks

  1. Revealing the Inherent Heterogeneity of Human Malignancies by Variant Consensus Strategies Coupled with Cancer Clonal Analysis. National Center for Toxicological Research, Food and Drug Administration. Jefferson, AR, May, 2014.
  2. Data Mining: An Introduction. Little Rock .Net User Group. Little Rock, AR, June, 2012.

Other Papers / Articles

  1. Peterson EA. Personalizing RSS Feeds with ASP .NET 2.0. 4 Guys From Rolla, June 6, 2007.
  2. Peterson EA, Li S. Using Asymmetric Encryption and Digital Signatures in a SQL Server 2005 Database. 4 Guys From Rolla, February 28, 2007.
  3. Peterson EA, Li S. Using Symmetric Encryption in a SQL Server 2005 database. 4 Guys From Rolla, February 21, 2007.
  4. Peterson EA, Li S. An Overview of Cryptographic Systems and Encrypting Database Data. 4 Guys From Rolla, February 14, 2007.
  5. Paruchuri V, Durresi A, Peterson EA. Network Adaptive Layered Multicast for Heterogeneous Wireless Networks. Manuscript, November, 2006.
  6. Peterson EA. Customizing the CreateUserWizard Control. 4 Guys From Rolla, July 5, 2006.
  7. Peterson EA. An Introduction to AJAX and Atlas with ASP .NET 2.0. 4 Guys From Rolla, June 21, 2006.