ERICH ALLEN PETERSON


PUBLICATIONS & TALKS

Journal Papers

  1. Chavan SS, He J, Tytarenko R, Deshpande S, Patel P, Bailey M, Stein CK, Stephens O, Weinhold N, Petty N, Stewart D, Rasche L, Bauer M, Ashby C, Peterson EA, Ali S, Ross J, Miller VA, Stephens P, Thanendrarajan S, Schinke C, Zangari M, Rhee van F, Barlogie B, Mughal TI, Davies FE, Morgan GJ, Walker BA. Bi-allelic Inactivation is More Prevalent at Relapse in Multiple Myeloma, Identifying RB1 as an Independent Prognostic Marker. Blood Cancer Journal, 2017. PMID: 28234347, paper
  2. Weinhold N, Ashby C, Rasche L, Chavan SS, Stein C, Stephens OW, Tytarenko R, Bauer MA, Meissner T, Deshpande, S, Patel PH, Buzder T, Molnar G, Peterson EA, van Rhee F, Zangari M, Thanendrarajan S, Schinke C, Tian E, Epstein J, Barlogie B, Davies FE, Heuck CJ, Walker BA, Morgan GJ. Clonal Selection and Double Hit Events Involving Tumor Suppressor Genes Underlie Relapse from Chemotherapy: Myeloma as a Model. Blood, 2016. paper
  3. Peterson EA, Bauer MA, Chavan SS, Ashby C, Weinhold N, Heuck CJ, Morgan GJ, Johann DJ. Enhancing Cancer Clonality Analysis with Integrative Genomics. BMC Bioinformatics 2015, 16(Suppl 13), September 2015, PMID: 26424171. paper
  4. Peterson EA, Chavan SS, Bauer MA, Heuck CJ, Johann DJ. Revealing the Inherent Heterogeneity of Human Malignancies by Variant Consensus Strategies Coupled with Cancer Clonal Analysis. BMC Bioinformatics 2014, 15(Suppl 11):S9, October 2014, PMID: 25350589. paper
  5. Bauer MA, Chavan SS, Peterson EA, Heuck CJ, Johann DJ. Leveraging the New with the Old: Providing a Framework for the Integration of Historic Microarray Studies with Next Generation Sequencing., BMC Bioinformatics 2014, 15(Suppl 11):S3, October 2014, PMID: 25350881. paper
  6. Chavan SS, Bauer MA, Peterson EA, Heuck CJ, Johann DJ. Towards the Integration, Annotation and Association of Historical Microarray Experiments with RNA-seq. BMC Bioinformatics, Vol. 14 (Suppl 14):S4, October 2013, PMID: 24268045. paper

Conference Papers

  1. Peterson EA, Zhang L, Tang P. Mining Probabilistic Association Rules from Uncertain Databases with Pruning. In Proceedings of IEEE SoutheastCon 2014 Conference, Lexington, KY, USA, March 2014. paper
  2. Peterson EA, Tang P. Mining Probabilistic Generalized Frequent Itemsets in Uncertain Databases. In Proceedings of the 51tst ACM Southeast Conference (ACMSE), Savannah, GA, USA, April 2013. paper / tech report / slides / code
  3. Peterson EA, Tang P. Fast Approximation of Probabilistic Frequent Closed Itemsets. In Proceedings of the 50th ACM Southeast Conference (ACMSE), Tuscaloosa, AL, USA, March 2012. paper / slides
  4. Abuhalimeh A, Tudoreanu ME, Peterson EA. How People Perceive the Accuracy of Information. AIP Conference Proceedings, Vol. 1326, No. 1, pp. 74–79, 2011. (virtually identical to paper #5).
  5. Tang P, Peterson EA.
    Mining Probabilistic Frequent Closed Itemsets in Uncertain Databases. In Proceedings of the 49th ACM Southeast Conference (ACMSE), Kennesaw, Georgia, USA, March 2011. paper / tech report / slides / code
  6. Abuhalimeh A, Tudoreanu E, Peterson EA. Subjective Evaluation of Accuracy of Data and Visualization. In Proceedings of the 15th International Conference on Information Quality (ICIQ) 2010, Little Rock, AR, USA, November 2010. paper
  7. Peterson EA, Tang P. Mining Relaxed Closed Subspace Clusters. In Proceedings of the 48th ACM Southeast Conference (ACMSE), Oxford, Mississippi, USA, April 2010. paper
  8. Peterson EA, Tang P. A Hybrid Approach to Mining Frequent Sequential Patterns. In Proceedings of the 47th ACM Southeast Conference (ACMSE), Article No. 87, Clemson, South Carolina, USA, March 2009. paper
  9. Peterson EA, Tang P. Mining Frequent Sequential Patterns with First-Occurrence Forests. In Proceedings of the 46th ACM Southeast Conference (ACMSE), pp. 34-39, Auburn, Alabama, USA, March 2008. paper
  10. Wei H, Dancer S, Kolluru S, Peterson EA. Framework of Bitmap Indices and Parallel Data Retrieval for Large Scale Data Warehouse on Grid. In Proceedings of the IADIS International Conference WWW/Internet 2007, pp. 329-336, 2007.

Abstracts & Posters

  1. Peterson EA, Gomez-Acevedo H, Liem J, Liu P, Johann DJ. An Automated Regression Testing Approach for High-Throughput Molecular Profiling Data. Fourteenth Annual Midsouth Computational Biology & Bioinformatics Conference, Little Rock, AR, USA, March, 2017. abstract / poster (Poster)
  2. Melchor L, Jones JR, Lenive O, Peterson EA, Brioli A, Murison A, Wardell CP, Kaiser MF, Proszek P, Boyle EM, Begum DB, Pawlyn C, Johnson DC, Rapado I, Cairns DA, Gregory WM, Owen RG, Jackson GH, Drayson MT, Davies FE, Martínez-López J, Houlston RS, Greaves M, Walker BA, Morgan GJ. Spatiotemporal Analysis of Intraclonal Heterogeneity in Multiple Myeloma: Unravelling the Impact of Treatment and the Propagating Capacity of Subclones using Whole Exome Sequencing. 57th ASH Annual Meeting and Exposition, Orlando, FL, USA, December 2015. (Oral)
  3. Heuck C, Weinhold N, Peterson EA, Bauer M, Stein CK, Ashby T, Chavan SS, Tytarenko R, Stephens OW, Meissner T, Johann DJ, Rhee F, Waheed S, Johnson SK, Zangari M, Matin A, Petty N, Yaccoby S, Davies FE, Epstein J, Barlogie B, Morgan GJ. The Impact of Combination Chemotherapy and Tandem Stem Cell Transplant on Clonal Substructure and Mutational Pattern at Relapse of MM. 57th ASH Annual Meeting and Exposition, Orlando, FL, USA, December 2015. (Oral)
  4. Heuck C, Chavan SS, Stein CK, Tytarenko R, Weinhold N, Ali S, Miller VA, Thanendrarajan S, Schinke C, Mohan M, Sawyer J, Peterson EA, Bauer MA, Ashby TC, Johann DJ, Rhee F, Waheed S, Zangari M, Davies FE, Barlogie B, Morgan GJ. Comprehensive Genomic Profiling of Multiple Myeloma in the Course of Clinical Care Identifies Targetable and Prognostically Significant Genomic Alterations. 57th ASH Annual Meeting and Exposition, Orlando, FL, USA, December 2015. (Oral)
  5. Weinhold N, Chavan SS, Heuck C, Stephens OW, Tytarenko R, Bauer M, Peterson EA, Ashby TC, Meissner T, Stein CK, Johann DJ, Johnson SK, Yaccoby S, Epstein J, Rhee F, Zangari M, Schinke C, Thanendrarajan S, Davies FE, Barlogie B, Morgan GJ. High Risk Multiple Myeloma Demonstrates Marked Spatial Genomic Heterogeneity Between Focal Lesions and Random Bone Marrow; Implications for Targeted Therapy and Treatment Resistance. 57th ASH Annual Meeting and Exposition, Orlando, FL, USA, December 2015. (Oral)
  6. Peterson EA, Chavan SS, Bauer MA, Heuck C, Johann DJ. Revealing the Inherent Heterogeneity of Human Malignancies by Variant Consensus Strategies Coupled with Cancer Clonal Analysis. Eleventh Annual Midsouth Computational Biology & Bioinformatics Society Conference, Stillwater, OK, USA, March 2014. (Best Post-Doc Oral Presentation Award) abstract / slides (Oral)
  7. Bauer MA, Peterson EA, Chavan SS, Pollock D, Heuck C, Johann DJ. Leveraging The Old With The New: Exploring and Integrating Historic Microarray Studies With Next Generation Sequencing For Multiple Myeloma. 55th ASH Annual Meeting and Exposition, New Orleans, LA, USA, December 2013. abstract / poster (Poster)
  8. Johann DJ, Zhang L, Peterson EA. Towards computer assisted laser microdissection. 2013 Southeast Regional IDeA Meeting, Little Rock, AR USA, November 2013. (Oral)
  9. Peterson EA, Chavan SS, Bauer MA, Heuck C, Johann DJ. Variant Consensus Reporter: Increasing the Confidence of Variants in Whole Exome Sequencing via a Consensus Approach. 2013 Southeast Regional IDeA Meeting, Little Rock, AR USA, November 2013. abstract / slides(Oral)
  10. Chavan SS, Bauer MA, Peterson EA, Heuck C, Yaccoby S, Johann DJ. Profiling Multiple Myeloma Engraftment Phenomena via an in-vivo SCID Mouse Model and RNA-seq. 2013 Southeast Regional IDeA Meeting, Little Rock, AR USA, November 2013. abstract / slides (Oral)
  11. Chavan SS, Bauer MA, Peterson EA, Johann DJ. Towards the Integration, Annotation and Association of Historical Microarray Experiments with RNA-seq. Tenth Annual Midsouth Computational Biology & Bioinformatics Society Conference, Columbia, MO, USA, April 2013. abstract (Oral)

Invited Talks

  1. Revealing the Inherent Heterogeneity of Human Malignancies by Variant Consensus Strategies Coupled with Cancer Clonal Analysis. National Center for Toxicological Research, Food and Drug Administration. Jefferson, AR, May, 2014.
  2. Data Mining: An Introduction. Little Rock .Net User Group. Little Rock, AR, June, 2012.

Other Papers / Articles

  1. Peterson EA. Personalizing RSS Feeds with ASP .NET 2.0. 4 Guys From Rolla, June 6, 2007.
  2. Peterson EA, Li S. Using Asymmetric Encryption and Digital Signatures in a SQL Server 2005 Database. 4 Guys From Rolla, February 28, 2007.
  3. Peterson EA, Li S. Using Symmetric Encryption in a SQL Server 2005 database. 4 Guys From Rolla, February 21, 2007.
  4. Peterson EA, Li S. An Overview of Cryptographic Systems and Encrypting Database Data. 4 Guys From Rolla, February 14, 2007.
  5. Paruchuri V, Durresi A, Peterson EA. Network Adaptive Layered Multicast for Heterogeneous Wireless Networks. Manuscript, November, 2006.
  6. Peterson EA. Customizing the CreateUserWizard Control. 4 Guys From Rolla, July 5, 2006.
  7. Peterson EA. An Introduction to AJAX and Atlas with ASP .NET 2.0. 4 Guys From Rolla, June 21, 2006.